HBM824.VVZM.979 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM573.GPLS.563

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

placenta

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM824.VVZM.979

Has Time Series Data:0

Description:These GeoMx spatial transcriptomics datasets were generated from term human placenta FFPE sections using the Whole Transcriptome Atlas assay. Guided by morphological markers, automated cell segmentation was used to define and profile regions of interest encompassing the major placental cell types, including extravillous trophoblast, syncytiotrophoblast, and endothelial cells.

Creation Time:2026-02-25 20:45:22.370000

Results found

Linked to

	Label	Description
	DSP-1001660014607-H-G03 S447 L004 R1 001.fastq.gz File (Entity type)	A 154 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660014607-H-A01 S373 L004 R1 001.fastq.gz File (Entity type)	A 252 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660014607-H-G03 S447 L004 R2 001.fastq.gz File (Entity type)	A 166 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660014607-H-A01 S373 L004 R2 001.fastq.gz File (Entity type)	A 256 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	3322 pA M.ome.tiff File (Entity type)	A 11.5 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	metadata.json File (Entity type)	A 49.9 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	contributors.tsv File (Entity type)	A 957 B file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	Donor 3322 01122023 20230113T2311 LabWorksheet.txt File (Entity type)	A 25.6 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	microscope hardware.json File (Entity type)	A 9.42 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	geomx-rnaseq-with-probes-metadata.tsv File (Entity type)	A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660014607-H-G03 S447 L004 R1 001.fastq.gz

File (Entity type)

A 154 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660014607-H-A01 S373 L004 R1 001.fastq.gz

File (Entity type)

A 252 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660014607-H-G03 S447 L004 R2 001.fastq.gz

File (Entity type)

A 166 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660014607-H-A01 S373 L004 R2 001.fastq.gz

File (Entity type)

A 256 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

3322 pA M.ome.tiff

File (Entity type)

A 11.5 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

metadata.json

File (Entity type)

A 49.9 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

contributors.tsv

File (Entity type)

A 957 B file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

Donor 3322 01122023 20230113T2311 LabWorksheet.txt

File (Entity type)

A 25.6 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

microscope hardware.json

File (Entity type)

A 9.42 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

geomx-rnaseq-with-probes-metadata.tsv

File (Entity type)

A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.