HBM627.SJQC.485 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM788.NCDX.684

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

placenta

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM627.SJQC.485

Has Time Series Data:0

Description:These GeoMx spatial transcriptomics datasets were generated from term human placenta FFPE sections using the Whole Transcriptome Atlas assay. Guided by morphological markers, automated cell segmentation was used to define and profile regions of interest encompassing the major placental cell types, including extravillous trophoblast, syncytiotrophoblast, and endothelial cells.

Creation Time:2026-02-25 14:02:07.828000

Results found

Linked to

	Label	Description
	DSP-1001660015016-A-A01 S133 L002 R2 001.fastq.gz File (Entity type)	A 4.53 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015016-A-A11 S143 L002 R1 001.fastq.gz File (Entity type)	A 513 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015016-A-A01 S133 L002 R1 001.fastq.gz File (Entity type)	A 4.67 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015016-A-A11 S143 L002 R2 001.fastq.gz File (Entity type)	A 549 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	geomx-rnaseq-with-probes-metadata.tsv File (Entity type)	A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	5f22c0db79b0a65b92bfed3868bb9d9d-metadata.tsv File (Entity type)	A 1.25 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	microscope hardware.json File (Entity type)	A 9.42 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	contributors.tsv File (Entity type)	A 957 B file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	3139 10122022 20221013T1947 LabWorksheet.txt File (Entity type)	A 15.3 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	3139 pB F.ome.tiff File (Entity type)	A 9.05 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015016-A-A01 S133 L002 R2 001.fastq.gz

File (Entity type)

A 4.53 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015016-A-A11 S143 L002 R1 001.fastq.gz

File (Entity type)

A 513 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015016-A-A01 S133 L002 R1 001.fastq.gz

File (Entity type)

A 4.67 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015016-A-A11 S143 L002 R2 001.fastq.gz

File (Entity type)

A 549 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

geomx-rnaseq-with-probes-metadata.tsv

File (Entity type)

A 1.89 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

5f22c0db79b0a65b92bfed3868bb9d9d-metadata.tsv

File (Entity type)

A 1.25 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

microscope hardware.json

File (Entity type)

A 9.42 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

contributors.tsv

File (Entity type)

A 957 B file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

3139 10122022 20221013T1947 LabWorksheet.txt

File (Entity type)

A 15.3 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

3139 pB F.ome.tiff

File (Entity type)

A 9.05 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.