HBM297.HDXP.342 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

right fallopian tube

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM297.HDXP.342

Has Time Series Data:0

Description:This upload supersedes the one originally done in December 2023. It contains exactly the same raw data files (FASTQ) for the same 83 sample datasets, for uterus/ovary/Fallopian tube. The only things that have changed are: 1) a correction to one field in the Visium-RNAseq metadata file (the "library layout" for all samples); and 2) new OME-TIFF files, with the exact same image data as before, but with corrections to the metadata in the XML header of each file. : ./Visium_9_RTF_4_S2_2slice

Creation Time:2025-02-19 02:26:28.474000

Results found

Linked to

	Label	Description
	right fallopian tube Anatomy (Entity type)	A fallopian tube that is part of a right side of organism.
	Visium 9 RTF 4 S2 2slice S4 L002 R2 001.fastq.gz File (Entity type)	A 4.91 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 9 RTF 4 S2 2slice S4 L001 R2 001.fastq.gz File (Entity type)	A 5.10 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 9 RTF 4 S2 2slice S4 L001 R1 001.fastq.gz File (Entity type)	A 2.27 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 9 RTF 4 S2 2slice S4 L002 R1 001.fastq.gz File (Entity type)	A 2.19 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0007.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0100.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0009.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0075.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0107.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

right fallopian tube

Anatomy (Entity type)

A fallopian tube that is part of a right side of organism.

Visium 9 RTF 4 S2 2slice S4 L002 R2 001.fastq.gz

File (Entity type)

A 4.91 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 9 RTF 4 S2 2slice S4 L001 R2 001.fastq.gz

File (Entity type)

A 5.10 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 9 RTF 4 S2 2slice S4 L001 R1 001.fastq.gz

File (Entity type)

A 2.27 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 9 RTF 4 S2 2slice S4 L002 R1 001.fastq.gz

File (Entity type)

A 2.19 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Brightfield HE 10msec image 0007.tiff

File (Entity type)