SNT847.TVBN.656 (Collection)

Taxon:

Mus musculus

Taxonomy (Entity type)

Subset Collection:

SNT525.RVKK.282

Collection (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

Brain

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT847.TVBN.656

Has Time Series Data:0

Description:To detect aged brain microglia and their gene signatures with preserved spatial context, we employed GeoMx digital spatial profiling in aged mouse brain tissue slices. Sagittal 5 μm section of corticolimbic regions from 28 month-old C57BL/6 female mouse brain were stained with IBA1 (microglia), Galectin-3 immunolabel markers and SYTO83 (nuclear dye) to segment cells for collection of cell-localized oligomers for whole mouse transcriptome sequencing with Illumina platform.

Creation Time:2026-04-08 11:45:31.920000

Results found

Linked to

	Label	Description
	DSP-1001660006332-A-B01 S12 L001 R1 001.fastq.gz File (Entity type)	A 164 MB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	DSP-1001660006332-A-B01 S12 L001 R2 001.fastq.gz File (Entity type)	A 191 MB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	A 20220809T2338 SeqCodeIndices.csv File (Entity type)	A 5.17 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	geomx-rnaseq-with-probes-metadata.tsv File (Entity type)	A 1.90 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	ome-tiff.channels.csv File (Entity type)	A 168 B file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	slide1.ome.tiff File (Entity type)	A 5.37 GB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	contributors.tsv File (Entity type)	A 301 B file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	A 20220809T2338 LabWorksheet.txt File (Entity type)	A 10.9 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	metadata.json File (Entity type)	A 53.9 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	microscope hardware.json File (Entity type)	A 2.00 B file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

DSP-1001660006332-A-B01 S12 L001 R1 001.fastq.gz

File (Entity type)

A 164 MB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

DSP-1001660006332-A-B01 S12 L001 R2 001.fastq.gz

File (Entity type)

A 191 MB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

A 20220809T2338 SeqCodeIndices.csv

File (Entity type)

A 5.17 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

geomx-rnaseq-with-probes-metadata.tsv

File (Entity type)

A 1.90 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

ome-tiff.channels.csv

File (Entity type)

A 168 B file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

slide1.ome.tiff

File (Entity type)

A 5.37 GB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

contributors.tsv

File (Entity type)

A 301 B file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

A 20220809T2338 LabWorksheet.txt

File (Entity type)

A 10.9 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

metadata.json

File (Entity type)

A 53.9 KB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

microscope hardware.json

File (Entity type)

A 2.00 B file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.