SNT628.QLSC.387 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

Pancreas

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT628.QLSC.387

Has Time Series Data:0

Description:We aim to characterize the distribution and biological heterogeneity of senescent cells in different anatomical regions of the pancreas from donors of varying ages. Mapping cellular senescence and its associated secretory phenotype in healthy human pancreas requires generating multi-modal high throughput data. We generate Xenium In Situ (10x Genomics) data with a v1 custom 300 gene panel from each of two or more regions (head superior, head inferior, middle, and tail) from whole pancreases collected from brain dead donors across adult lifespan. We identify and explore spatially resolved cell types of anatomical structures in the tissue, for example, ducts, veins, arteries, and islets of Langerhans.

Creation Time:2024-11-08 18:29:11.346000

Results found

Linked to

	Label	Description
	matrix.mtx.gz File (Entity type)	A 111 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	transcripts.csv.gz File (Entity type)	A 3.53 GB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	cells.csv.gz File (Entity type)	A 35.6 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	nucleus boundaries.csv.gz File (Entity type)	A 80.7 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	cell boundaries.csv.gz File (Entity type)	A 83.5 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	barcodes.tsv.gz File (Entity type)	A 2.55 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	features.tsv.gz File (Entity type)	A 3.98 KB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	cycle 06 grn.tiff File (Entity type)	A 2.56 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	cycle 08 blu.tiff File (Entity type)	A 3.30 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project
	analysis summary.html File (Entity type)	A 16.6 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

matrix.mtx.gz

File (Entity type)

A 111 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

transcripts.csv.gz

File (Entity type)

A 3.53 GB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

cells.csv.gz

File (Entity type)

A 35.6 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

nucleus boundaries.csv.gz

File (Entity type)

A 80.7 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

cell boundaries.csv.gz

File (Entity type)

A 83.5 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

barcodes.tsv.gz

File (Entity type)

A 2.55 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

features.tsv.gz

File (Entity type)

A 3.98 KB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

cycle 06 grn.tiff

File (Entity type)

A 2.56 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

cycle 08 blu.tiff

File (Entity type)

A 3.30 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

analysis summary.html

File (Entity type)

A 16.6 MB file from SenNet produced from OBI:0001985 as part of the TMC UConn Health project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.