SNT799.GZJV.547 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

adipose tissue

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT799.GZJV.547

Has Time Series Data:0

Description:Spatial transcriptomics with 10X Genomics Visium performed on two human adipose formalin-fixed paraffin-embedded (FFPE) tissues samples. The two samples were visceral and subcutaneous adipose from the same female subject (age 48). Slides were prepared with 10 µm tissue sections and the10X Genomics Visium CytAssist instrument was used for probe transfer to the 11 x 11 mm Visium capture slide.

Creation Time:2024-03-14 19:03:03.610000

Results found

Linked to

	Label	Description
	V52L19-029 B1 S2 L002 R2 001.fastq.gz File (Entity type)	A 23.9 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V52L19-029 B1 S2 L002 R1 001.fastq.gz File (Entity type)	A 22.8 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	h-and-e-metadata.tsv File (Entity type)	A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	scRNAseq-visium-with-probes-metadata.tsv File (Entity type)	A 2.03 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	microscope hardware.json File (Entity type)	A 2.00 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V52L19-029 B1 fiducial.tiff File (Entity type)	A 5.91 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	ome-tiff.channels.csv File (Entity type)	A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	alignment.json File (Entity type)	A 1.63 MB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	28ab2fb5cb20181e5f7ef639820014dc-metadata.tsv File (Entity type)	A 584 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	metadata.json File (Entity type)	A 98.0 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V52L19-029 B1 S2 L002 R2 001.fastq.gz

File (Entity type)

A 23.9 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V52L19-029 B1 S2 L002 R1 001.fastq.gz

File (Entity type)

A 22.8 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

h-and-e-metadata.tsv

File (Entity type)

A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

scRNAseq-visium-with-probes-metadata.tsv

File (Entity type)

A 2.03 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

microscope hardware.json

File (Entity type)

A 2.00 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V52L19-029 B1 fiducial.tiff

File (Entity type)

A 5.91 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

ome-tiff.channels.csv

File (Entity type)

A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

alignment.json

File (Entity type)

A 1.63 MB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

28ab2fb5cb20181e5f7ef639820014dc-metadata.tsv

File (Entity type)

A 584 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

metadata.json

File (Entity type)

A 98.0 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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