SNT748.GHMR.688 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

adipose tissue

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT748.GHMR.688

Has Time Series Data:0

Description:Spatial transcriptomics with 10X Genomics Visium CytAssist performed on four human adipose formalin-fixed paraffin-embedded (FFPE) tissues samples. The four adipose samples included visceral and subcutaneous adipose from the same two female individuals (ages 39 and 64). Slides were prepared with 10 µm tissue sections and the 10X Genomics Visium CytAssist instrument was used for probe transfer to the 6.5 x 6.5 mm Visium CytAssist capture slides. Samples were processed according to the 10X Genomics Visium CytAssist Spatial Gene Expression for FFPE procedure with the Visium Human Transcriptome Probe Kit v2.

Creation Time:2024-10-04 17:53:01.055000

Results found

Linked to

	Label	Description
	V42L29-123 A1 S6 L002 R1 001.fastq.gz File (Entity type)	A 7.65 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123 A1 S6 L002 R2 001.fastq.gz File (Entity type)	A 11.6 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123 A1.ome.tiff File (Entity type)	A 6.72 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	metadata.json File (Entity type)	A 103 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	alignment.json File (Entity type)	A 558 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123.gpr File (Entity type)	A 531 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123 A1 fiducial.tiff File (Entity type)	A 4.32 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	h-and-e-metadata.tsv File (Entity type)	A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	ome-tiff.channels.csv File (Entity type)	A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	e23dd7454b24baeafa3792611bd2cdb1-metadata.tsv File (Entity type)	A 578 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 A1 S6 L002 R1 001.fastq.gz

File (Entity type)

A 7.65 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 A1 S6 L002 R2 001.fastq.gz

File (Entity type)

A 11.6 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 A1.ome.tiff

File (Entity type)

A 6.72 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

metadata.json

File (Entity type)

A 103 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

alignment.json

File (Entity type)

A 558 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123.gpr

File (Entity type)

A 531 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 A1 fiducial.tiff

File (Entity type)

A 4.32 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

h-and-e-metadata.tsv

File (Entity type)

A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

ome-tiff.channels.csv

File (Entity type)

A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

e23dd7454b24baeafa3792611bd2cdb1-metadata.tsv

File (Entity type)

A 578 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.