HBM788.QPJT.262 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Subset Collection:

HBM876.XNRH.336

Collection (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

left kidney

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM788.QPJT.262

Has Time Series Data:0

Description:Autofluorescence Microscopy collected from the Left Kidney of a 58 year old Black or African American Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Microscopy images were collected with a Zeiss Axio Scan.Z1 using 3 channels DAPI (excitation: 335-383 nm/emission: 420-470 nm), eGFP (excitation: 450-490 nm/emission: 500-550 nm), and dsRed (excitation: 538-562 nm/emission: 570-640 nm). Support was provided by the NIH Common Fund and National Institute of Diabetes and Digestive and Kidney Diseases (U54 DK120058). Tissue was collected through the Cooperative Human Tissue Network with support provided by the NIH National Cancer Institute (5 UM1 CA183727-08).

Creation Time:2020-05-18 12:36:14.604000

Results found

Linked to

	Label	Description
	left kidney Anatomy (Entity type)	A kidney that is part of a left side of organism.
	HBM876.XNRH.336 Collection (Entity type)	A Collection from HuBMAP
	transform 03 VAN0006-LK-2-86-AF preMxIF custom.txt File (Entity type)	A 464 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 00 VAN0006-LK-2-86-AF preMxIF initial.txt File (Entity type)	A 804 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	AF-metadata.tsv File (Entity type)	A 676 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 01 VAN0006-LK-2-86-AF preMxIF initial.txt File (Entity type)	A 780 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0006-LK-2-86-preAF MxIF registered.ome.tiff File (Entity type)	A 2.40 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 05 VAN0006-LK-2-86-AF preMxIF append affine.txt File (Entity type)	A 794 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 02 VAN0006-LK-2-86-AF preMxIF rigid.txt File (Entity type)	A 783 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	transform 04 VAN0006-LK-2-86-AF preMxIF append rigid.txt File (Entity type)	A 782 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

left kidney

Anatomy (Entity type)

A kidney that is part of a left side of organism.

HBM876.XNRH.336

Collection (Entity type)

A Collection from HuBMAP

transform 03 VAN0006-LK-2-86-AF preMxIF custom.txt

File (Entity type)

A 464 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 00 VAN0006-LK-2-86-AF preMxIF initial.txt

File (Entity type)

A 804 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

AF-metadata.tsv

File (Entity type)

A 676 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 01 VAN0006-LK-2-86-AF preMxIF initial.txt

File (Entity type)

A 780 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0006-LK-2-86-preAF MxIF registered.ome.tiff

File (Entity type)

A 2.40 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 05 VAN0006-LK-2-86-AF preMxIF append affine.txt

File (Entity type)

A 794 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 02 VAN0006-LK-2-86-AF preMxIF rigid.txt

File (Entity type)

A 783 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

transform 04 VAN0006-LK-2-86-AF preMxIF append rigid.txt

File (Entity type)

A 782 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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