HBM367.XMDL.393 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

Pancreas

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM367.XMDL.393

Has Time Series Data:0

Description:Autofluorescence Microscopy collected from the pancreas of a 55-year-old Black or African American female donor by the Biomolecular Multimodal Imaging Center (BIOMIC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Autofluorescence images were collected with a Carl Zeiss microscopy AxioScan.Z1 using 3 channels/filters -- DAPI (excitation: 335-383 nm/emission: 420-470 nm), eGFP (excitation: 450-490 nm/emission: 500-550 nm), and dsRed (excitation: 538-562 nm/emission: 570-640 nm). Support was provided by the NIH Common Fund and National Eye Institute (U54 EY032442). Human pancreas tissue was identified from nondiabetic donors using a national network of partnerships, including the International Institute for Advancement of Medicine (IIAM), and acquired in partnership with the Organ Procurement and Transplantation Network (OPTN) in association with the Human Pancreas Analysis Program (HPAP) and Vanderbilt Pancreas Biorepository (VPB).

Creation Time:2024-05-28 16:00:22.605000

Results found

Linked to

	Label	Description
	antibodies.tsv File (Entity type)	A 988 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0066-PA-1-2 HE to AF transformations.txt File (Entity type)	A 2.58 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	metadata.json File (Entity type)	A 43.0 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	c02439961c280d8d56e088e43445ede8-metadata.tsv File (Entity type)	A 803 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0066-PA-1-2 HE to AF registered.ome.tiff File (Entity type)	A 113 MB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	microscope hardware.json File (Entity type)	A 5.91 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0066-PA-1-2 AF registered.ome.tiff File (Entity type)	A 1.94 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	contributors.tsv File (Entity type)	A 4.22 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	channel layout.tsv File (Entity type)	A 89.0 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project
	VAN0066-PA-1-2 HE to AF registered.ome-tiff.channels.csv File (Entity type)	A 168 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

antibodies.tsv

File (Entity type)

A 988 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0066-PA-1-2 HE to AF transformations.txt

File (Entity type)

A 2.58 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

metadata.json

File (Entity type)

A 43.0 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

c02439961c280d8d56e088e43445ede8-metadata.tsv

File (Entity type)

A 803 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0066-PA-1-2 HE to AF registered.ome.tiff

File (Entity type)

A 113 MB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

microscope hardware.json

File (Entity type)

A 5.91 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0066-PA-1-2 AF registered.ome.tiff

File (Entity type)

A 1.94 GB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

contributors.tsv

File (Entity type)

A 4.22 KB file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

channel layout.tsv

File (Entity type)

A 89.0 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

VAN0066-PA-1-2 HE to AF registered.ome-tiff.channels.csv

File (Entity type)

A 168 B file from HuBMAP produced from OBI:0003087 as part of the Vanderbilt TMC project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.