hmgc1 buccal mucosa (Collection)

Subset Collection:

hmgc1

Collection (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Has Time Series Data:false

Description:This collection contains a non-redundant catalog of bacterial genes from buccal_mucosa samples. This was done by clustering the gene indices (refer "hmgi1_buccal_mucosa" collection), using the same identity parameter used by the Metahit project to cluster their human intestinal tract data (Qin et al, 2010. Nature, 464:59). Genes were compared at a 95% identity cut-off and those overlapping were considered redundant and removed. Attention: the gene counts available here differ from what was originally reported in the publication. This is due to the fact that samples that did not pass our assembly QC had not been removed prior to initial clustering. Clustering has been rerun and the data is now accurate.

Abbreviation:hmgc1_buccal_mucosa

Results found

Linked to

	Label	Description
	SRS019124 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 763536994 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS013945 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 159005010 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 763901136 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS011090 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	SRS015274 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project
	HHS 764224817 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	HHS 158337416 Subject (Entity type)	A subject from HMP produced as part of the HHS project
	SRS057022 Biosample (Entity type)	A biosample from HMP produced as part of the HHS project

SRS019124

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

HHS 763536994

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS013945

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

HHS 159005010

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 763901136

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS011090

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

SRS015274

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

HHS 764224817

Subject (Entity type)

A subject from HMP produced as part of the HHS project

HHS 158337416

Subject (Entity type)

A subject from HMP produced as part of the HHS project

SRS057022

Biosample (Entity type)

A biosample from HMP produced as part of the HHS project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.