HBM567.NZDR.249 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

hubmap-c2m2-jun26.zip

Processed File (Entity type)

Dcc:

HuBMAP

DCC (Entity type)

Anatomy:

left ovary

Anatomy (Entity type)

Persistent Id:https://doi.org/10.35079/HBM567.NZDR.249

Has Time Series Data:0

Description:Visium spatial transcriptomics data from Penn-TMC for 99 tissue slices from uterus/ovary/Fallopian tube, from two human female donors. : ./Visium_13_18_S2_b

Creation Time:2024-02-02 22:10:45.743000

Results found

Linked to

	Label	Description
	left ovary Anatomy (Entity type)	An ovary that is part of a left side of organism.
	Visium 13 18 S2 b S4 L001 R1 001.fastq.gz File (Entity type)	A 1.89 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 13 18 S2 b S4 L002 R2 001.fastq.gz File (Entity type)	A 4.30 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 13 18 S2 b S4 L001 R2 001.fastq.gz File (Entity type)	A 4.29 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Visium 13 18 S2 b S4 L002 R1 001.fastq.gz File (Entity type)	A 1.89 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0095.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0007.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	Brightfield HE 10msec image 0118.tiff File (Entity type)	A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	scRNAseq-10Genomics-v3-metadata.tsv File (Entity type)	A 1.75 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project
	microscope hardware.json File (Entity type)	A 29.6 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

left ovary

Anatomy (Entity type)

An ovary that is part of a left side of organism.

Visium 13 18 S2 b S4 L001 R1 001.fastq.gz

File (Entity type)

A 1.89 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 13 18 S2 b S4 L002 R2 001.fastq.gz

File (Entity type)

A 4.30 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 13 18 S2 b S4 L001 R2 001.fastq.gz

File (Entity type)

A 4.29 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Visium 13 18 S2 b S4 L002 R1 001.fastq.gz

File (Entity type)

A 1.89 GB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Brightfield HE 10msec image 0095.tiff

File (Entity type)

A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Brightfield HE 10msec image 0007.tiff

File (Entity type)

A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

Brightfield HE 10msec image 0118.tiff

File (Entity type)

A 17.8 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

scRNAseq-10Genomics-v3-metadata.tsv

File (Entity type)

A 1.75 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

microscope hardware.json

File (Entity type)

A 29.6 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of Pennsylvania project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.