SNT525.QTVC.526 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

adipose tissue

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT525.QTVC.526

Has Time Series Data:0

Description:Spatial transcriptomics with 10X Genomics Visium CytAssist performed on four human adipose formalin-fixed paraffin-embedded (FFPE) tissues samples. The four adipose samples included visceral and subcutaneous adipose from the same two female individuals (ages 39 and 64). Slides were prepared with 10 µm tissue sections and the 10X Genomics Visium CytAssist instrument was used for probe transfer to the 6.5 x 6.5 mm Visium CytAssist capture slides. Samples were processed according to the 10X Genomics Visium CytAssist Spatial Gene Expression for FFPE procedure with the Visium Human Transcriptome Probe Kit v2.

Creation Time:2024-10-04 17:53:02.465000

Results found

Linked to

	Label	Description
	V42L29-123 D1 S7 L002 R2 001.fastq.gz File (Entity type)	A 12.3 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123 D1 S7 L002 R1 001.fastq.gz File (Entity type)	A 8.04 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	ome-tiff.channels.csv File (Entity type)	A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123 D1 fiducial.tiff File (Entity type)	A 2.98 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	metadata.json File (Entity type)	A 107 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	scRNAseq-visium-with-probes-metadata.tsv File (Entity type)	A 2.03 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	V42L29-123 D1.ome.tiff File (Entity type)	A 8.84 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	h-and-e-metadata.tsv File (Entity type)	A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	17d4300e4601936b9f1accacddb3831a-metadata.tsv File (Entity type)	A 578 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project
	alignment.json File (Entity type)	A 556 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 D1 S7 L002 R2 001.fastq.gz

File (Entity type)

A 12.3 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 D1 S7 L002 R1 001.fastq.gz

File (Entity type)

A 8.04 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

ome-tiff.channels.csv

File (Entity type)

A 122 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 D1 fiducial.tiff

File (Entity type)

A 2.98 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

metadata.json

File (Entity type)

A 107 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

scRNAseq-visium-with-probes-metadata.tsv

File (Entity type)

A 2.03 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

V42L29-123 D1.ome.tiff

File (Entity type)

A 8.84 GB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

h-and-e-metadata.tsv

File (Entity type)

A 947 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

17d4300e4601936b9f1accacddb3831a-metadata.tsv

File (Entity type)

A 578 B file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

alignment.json

File (Entity type)

A 556 KB file from SenNet produced from OBI:0001985 as part of the TMC University of Minnesota Niedernhofer project

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The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

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Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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