SNT337.FMRD.992 (Collection)

Taxon:

Homo sapiens

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

large intestine

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT337.FMRD.992

Has Time Series Data:0

Description:Upload of 48 Colon Xenium datasets: 12 healthy adults (ages 19-82) each with samples from ascending, descending, transverse and rectum locations. Assay completed with v1 Xenium chemistry with cell segmentation and the 10X hColon 322 gene plus custom senescence 100 gene panels. 59 y.o. transverse healthy colon biopsy

Creation Time:2026-05-26 15:48:00.214000

Results found

Linked to

	Label	Description
	gene panel.json File (Entity type)	A 221 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	output-XETG00189 0063156 57420C-3PCK8T-JS 20250518 011719.tissue-boundary.geojson File (Entity type)	A 150 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	transcript locations.csv File (Entity type)	A 54.6 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	morphology focus 0000.ome.tif File (Entity type)	A 41.8 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	output-XETG00189 0063156 57420C-3PCK8T-JS 20250518 011719.ome.tiff File (Entity type)	A 718 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	contributors.tsv File (Entity type)	A 1.39 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	microscope hardware.json File (Entity type)	A 0.00 B file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	output-XETG00189 0063156 57420C-3PCK8T-JS 20250518 011719.ome-tiff.channels.csv File (Entity type)	A 203 B file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	metadata.json File (Entity type)	A 74.8 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project
	morphology mip.ome.tif File (Entity type)	A 718 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

gene panel.json

File (Entity type)

A 221 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

output-XETG00189 0063156 57420C-3PCK8T-JS 20250518 011719.tissue-boundary.geojson

File (Entity type)

A 150 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

transcript locations.csv

File (Entity type)

A 54.6 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

morphology focus 0000.ome.tif

File (Entity type)

A 41.8 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

output-XETG00189 0063156 57420C-3PCK8T-JS 20250518 011719.ome.tiff

File (Entity type)

A 718 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

contributors.tsv

File (Entity type)

A 1.39 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

microscope hardware.json

File (Entity type)

A 0.00 B file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

output-XETG00189 0063156 57420C-3PCK8T-JS 20250518 011719.ome-tiff.channels.csv

File (Entity type)

A 203 B file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

metadata.json

File (Entity type)

A 74.8 KB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

morphology mip.ome.tif

File (Entity type)

A 718 MB file from SenNet produced from OBI:0001985 as part of the TMC Duke University project

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.