SNT557.HCMZ.334 (Collection)

Taxon:

Mus musculus

Taxonomy (Entity type)

Dcc Asset:

sennet c2m2 jun26.zip

Processed File (Entity type)

Dcc:

SenNet

DCC (Entity type)

Anatomy:

muscle structure

Anatomy (Entity type)

Persistent Id:https://doi.org/10.60586/SNT557.HCMZ.334

Has Time Series Data:0

Description:We aim to map the distribution and transcriptional heterogeneity of senescent cells in skeletal muscle tissue of aged mice using Xenium spatial transcriptomics. We use p21-Cre mice to eliminate p21high senescent cells in vivo. The skeletal muscle tissue is collected from three groups of mice: young mice (6 months old), aged mice (27 months old, p21-Cre/+; LUC/+), and aged mice with eliminated senescent cells (27 months old, p21-Cre/+; DTA/+). After fixation, paraffin embedding, and sectioning, tissues are analyzed using Xenium spatial gene expression profiling and stained with hematoxylin and eosin (H&E). Spatial mapping visualizes tissue structure and the localization of senescent cells, comprehensively demonstrating how the number, characteristics, and microenvironment of senescent cells change in skeletal muscle tissue.

Creation Time:2026-02-26 21:01:13.835000

Results found

Linked to

	Label	Description
	muscle structure Anatomy (Entity type)	Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms...
	cells.csv.gz File (Entity type)	A 9.56 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	features.tsv.gz File (Entity type)	A 4.25 KB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	nucleus boundaries.csv.gz File (Entity type)	A 37.9 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	cell boundaries.csv.gz File (Entity type)	A 44.4 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	matrix.mtx.gz File (Entity type)	A 28.0 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	barcodes.tsv.gz File (Entity type)	A 714 KB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	projection.csv File (Entity type)	A 34.7 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	cycle 14 yel.tiff File (Entity type)	A 7.01 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project
	cycle 01 grn.tiff File (Entity type)	A 4.30 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

muscle structure

Anatomy (Entity type)

Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms...

cells.csv.gz

File (Entity type)

A 9.56 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

features.tsv.gz

File (Entity type)

A 4.25 KB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

nucleus boundaries.csv.gz

File (Entity type)

A 37.9 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

cell boundaries.csv.gz

File (Entity type)

A 44.4 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

matrix.mtx.gz

File (Entity type)

A 28.0 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

barcodes.tsv.gz

File (Entity type)

A 714 KB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

projection.csv

File (Entity type)

A 34.7 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

cycle 14 yel.tiff

File (Entity type)

A 7.01 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

cycle 01 grn.tiff

File (Entity type)

A 4.30 MB file from SenNet produced from OBI:0001985 as part of the TMC The Jackson Laboratory project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.