SRS104842 (Biosample)

Subject:

HHS 861967750

Subject (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Anatomy:

supragingival dental plaque

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	hmcgi2 861967750 supragingival plaque Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_861967750_supragingival_plaque" collec...
	861967750.spp.gff3.bz2 File (Entity type)	A 27.9 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS104842.fna.bz2 File (Entity type)	A 99.4 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmwgsqcv2 SRS104842 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS104842 sample to SRA whe...
	hmgc-supragingival plaque-0.90-centroids.fa.bz2 File (Entity type)	A 627 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS104842.MetaRef-unaligned reads.fastq.tar.bz2 File (Entity type)	A 9.52 GB file from HMP produced from OBI:0002623 as part of the HHS project
	hmcasm2 861967750 supragingival plaque Collection (Entity type)	Quality trimmed reads generated from supragingival_plaque samples from HHS_861967750 host across mul...
	hmasm2 SRS104842 Collection (Entity type)	Contigs assembled from sequence reads of SRS104842 sample using IDBA-UD
	hmrac2 SRS104842 Collection (Entity type)	Reads from SRS104842 sample are aligned to its assembled contigs.
	SRS104842 hmrac2.tar.bz2 File (Entity type)	A 20.6 GB file from HMP produced from OBI:0002623 as part of the HHS project

hmcgi2 861967750 supragingival plaque

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_861967750_supragingival_plaque" collec...

861967750.spp.gff3.bz2

File (Entity type)

A 27.9 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS104842.fna.bz2

File (Entity type)

A 99.4 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmwgsqcv2 SRS104842

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS104842 sample to SRA whe...

hmgc-supragingival plaque-0.90-centroids.fa.bz2

File (Entity type)

A 627 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS104842.MetaRef-unaligned reads.fastq.tar.bz2

File (Entity type)

A 9.52 GB file from HMP produced from OBI:0002623 as part of the HHS project

hmcasm2 861967750 supragingival plaque

Collection (Entity type)

Quality trimmed reads generated from supragingival_plaque samples from HHS_861967750 host across mul...

hmasm2 SRS104842

Collection (Entity type)

Contigs assembled from sequence reads of SRS104842 sample using IDBA-UD

hmrac2 SRS104842

Collection (Entity type)

Reads from SRS104842 sample are aligned to its assembled contigs.

SRS104842 hmrac2.tar.bz2

File (Entity type)

A 20.6 GB file from HMP produced from OBI:0002623 as part of the HHS project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.