SRS017533 (Biosample)

Subject:

HHS 160502038

Subject (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Anatomy:

dorsum of tongue

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	hmbsa1 tongue dorsum Collection (Entity type)	Reads that were not assembled as part of the whole metagenome SOAPdenovo-based assembly approach (av...
	hmcgi2 160502038 tongue dorsum Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_160502038_tongue_dorsum" collection) w...
	hmgoi1 SRS017533 genels Collection (Entity type)	Gene abundance file (ie how many copies are present in the community) for SRS017533 sample
	hmasm2 SRS017533 Collection (Entity type)	Contigs assembled from sequence reads of SRS017533 sample using IDBA-UD
	metacyc enzyme.combined md.txt.bz2 File (Entity type)	A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project
	tongue dorsum nr.fasta.bz2 File (Entity type)	A 286 MB file from HMP produced from OBI:0002623 as part of the HHS project
	Synthetic gene clusters md.txt.bz2 File (Entity type)	A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS017533.MetaRef-unaligned reads.fastq.tar.bz2 File (Entity type)	A 4.59 GB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS017533.with fasta.gff3.bz2 File (Entity type)	A 37.7 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmgi1 Collection (Entity type)	Gene Index: The collection contains gene index files generated by running gene predictions and annot...

hmbsa1 tongue dorsum

Collection (Entity type)

Reads that were not assembled as part of the whole metagenome SOAPdenovo-based assembly approach (av...

hmcgi2 160502038 tongue dorsum

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_160502038_tongue_dorsum" collection) w...

hmgoi1 SRS017533 genels

Collection (Entity type)

Gene abundance file (ie how many copies are present in the community) for SRS017533 sample

hmasm2 SRS017533

Collection (Entity type)

Contigs assembled from sequence reads of SRS017533 sample using IDBA-UD

metacyc enzyme.combined md.txt.bz2

File (Entity type)

A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project

tongue dorsum nr.fasta.bz2

File (Entity type)

A 286 MB file from HMP produced from OBI:0002623 as part of the HHS project

Synthetic gene clusters md.txt.bz2

File (Entity type)

A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS017533.MetaRef-unaligned reads.fastq.tar.bz2

File (Entity type)

A 4.59 GB file from HMP produced from OBI:0002623 as part of the HHS project

SRS017533.with fasta.gff3.bz2

File (Entity type)

A 37.7 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmgi1

Collection (Entity type)

Gene Index: The collection contains gene index files generated by running gene predictions and annot...

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Community

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.