SRS017439 (Biosample)

Subject:

HHS 160319967

Subject (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Anatomy:

dorsum of tongue

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	hmbsa1 tongue dorsum Collection (Entity type)	Reads that were not assembled as part of the whole metagenome SOAPdenovo-based assembly approach (av...
	hmwgsqcv2 SRS017439 Collection (Entity type)	QC and Merged reads: Sequencing center deposited metagenome sequence for SRS017439 sample to SRA whe...
	hmrarg2 SRS017439 Collection (Entity type)	Unaligned raw reads resulting from alignment of reads from SRS017439 sample to MetaRef reference gen...
	hmcgi2 160319967 tongue dorsum Collection (Entity type)	Structural annotation of co-assembled contigs (refer "hmcasm2_160319967_tongue_dorsum" collection) w...
	SRS017439.MetaRef-unaligned reads.fastq.tar.bz2 File (Entity type)	A 5.79 GB file from HMP produced from OBI:0002623 as part of the HHS project
	160319967.td.gff3.bz2 File (Entity type)	A 24.5 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmgoi1 SRS017439 genels Collection (Entity type)	Gene abundance file (ie how many copies are present in the community) for SRS017439 sample
	SRS017439.gff3.bz2 File (Entity type)	A 11.3 MB file from HMP produced from OBI:0002623 as part of the HHS project
	metacyc enzyme.combined md.txt.bz2 File (Entity type)	A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project
	SRS017439.fna.bz2 File (Entity type)	A 42.4 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmbsa1 tongue dorsum

Collection (Entity type)

Reads that were not assembled as part of the whole metagenome SOAPdenovo-based assembly approach (av...

hmwgsqcv2 SRS017439

Collection (Entity type)

QC and Merged reads: Sequencing center deposited metagenome sequence for SRS017439 sample to SRA whe...

hmrarg2 SRS017439

Collection (Entity type)

Unaligned raw reads resulting from alignment of reads from SRS017439 sample to MetaRef reference gen...

hmcgi2 160319967 tongue dorsum

Collection (Entity type)

Structural annotation of co-assembled contigs (refer "hmcasm2_160319967_tongue_dorsum" collection) w...

SRS017439.MetaRef-unaligned reads.fastq.tar.bz2

File (Entity type)

A 5.79 GB file from HMP produced from OBI:0002623 as part of the HHS project

160319967.td.gff3.bz2

File (Entity type)

A 24.5 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmgoi1 SRS017439 genels

Collection (Entity type)

Gene abundance file (ie how many copies are present in the community) for SRS017439 sample

SRS017439.gff3.bz2

File (Entity type)

A 11.3 MB file from HMP produced from OBI:0002623 as part of the HHS project

metacyc enzyme.combined md.txt.bz2

File (Entity type)

A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project

SRS017439.fna.bz2

File (Entity type)

A 42.4 MB file from HMP produced from OBI:0002623 as part of the HHS project

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.