SRS019125 (Biosample)

Subject:

HHS 763496533

Subject (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Anatomy:

gingiva

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	hmasm1 attached keratinized gingiva Collection (Entity type)	SOAPdenovo v.1.04 assembled sequences from Illumina raw reads generated by whole metagenome sequenci...
	metacyc enzyme.combined md.txt.bz2 File (Entity type)	A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project
	attached keratinized gingiva nr.fasta.bz2 File (Entity type)	A 17.8 MB file from HMP produced from OBI:0002623 as part of the HHS project
	a ging uni mh.fasta.bz2 File (Entity type)	A 25.7 MB file from HMP produced from OBI:0002623 as part of the HHS project
	Synthetic gene clusters md.txt.bz2 File (Entity type)	A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmgi1 Collection (Entity type)	Gene Index: The collection contains gene index files generated by running gene predictions and annot...
	hmgoi1 carbohydrate active enzymes Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...
	hmrarg2 SRS019125 Collection (Entity type)	Unaligned raw reads resulting from alignment of reads from SRS019125 sample to MetaRef reference gen...
	hmgoi1 viruses Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for virus genes.
	763496533.ag.fna.bz2 File (Entity type)	A 21.6 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmasm1 attached keratinized gingiva

Collection (Entity type)

SOAPdenovo v.1.04 assembled sequences from Illumina raw reads generated by whole metagenome sequenci...

metacyc enzyme.combined md.txt.bz2

File (Entity type)

A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project

attached keratinized gingiva nr.fasta.bz2

File (Entity type)

A 17.8 MB file from HMP produced from OBI:0002623 as part of the HHS project

a ging uni mh.fasta.bz2

File (Entity type)

A 25.7 MB file from HMP produced from OBI:0002623 as part of the HHS project

Synthetic gene clusters md.txt.bz2

File (Entity type)

A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmgi1

Collection (Entity type)

Gene Index: The collection contains gene index files generated by running gene predictions and annot...

hmgoi1 carbohydrate active enzymes

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...

hmrarg2 SRS019125

Collection (Entity type)

Unaligned raw reads resulting from alignment of reads from SRS019125 sample to MetaRef reference gen...

hmgoi1 viruses

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for virus genes.

763496533.ag.fna.bz2

File (Entity type)

A 21.6 MB file from HMP produced from OBI:0002623 as part of the HHS project

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.