SRS013950 (Biosample)

Subject:

HHS 763496533

Subject (Entity type)

Project:

HHS

Project (Entity type)

Dcc Asset:

datapackage.zip

Processed File (Entity type)

Dcc:

HMP

DCC (Entity type)

Anatomy:

subgingival dental plaque

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	763496533.sbp.tar.bz2 File (Entity type)	A 674 KB file from HMP produced from OBI:0002623 as part of the HHS project
	763496533.sbp.gff3.bz2 File (Entity type)	A 14.6 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmgoi1 SRS013950 genels Collection (Entity type)	Gene abundance file (ie how many copies are present in the community) for SRS013950 sample
	metacyc enzyme.combined md.txt.bz2 File (Entity type)	A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmcasm2 763496533 subgingival plaque Collection (Entity type)	Quality trimmed reads generated from subgingival_plaque samples from HHS_763496533 host across multi...
	Synthetic gene clusters md.txt.bz2 File (Entity type)	A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project
	hmasm2 SRS013950 Collection (Entity type)	Contigs assembled from sequence reads of SRS013950 sample using IDBA-UD
	hmgi1 Collection (Entity type)	Gene Index: The collection contains gene index files generated by running gene predictions and annot...
	hmgc1 subgingival plaque Collection (Entity type)	This collection contains a non-redundant catalog of bacterial genes from subgingival_plaque samples....
	hmgoi1 carbohydrate active enzymes Collection (Entity type)	Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...

763496533.sbp.tar.bz2

File (Entity type)

A 674 KB file from HMP produced from OBI:0002623 as part of the HHS project

763496533.sbp.gff3.bz2

File (Entity type)

A 14.6 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmgoi1 SRS013950 genels

Collection (Entity type)

Gene abundance file (ie how many copies are present in the community) for SRS013950 sample

metacyc enzyme.combined md.txt.bz2

File (Entity type)

A 281 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmcasm2 763496533 subgingival plaque

Collection (Entity type)

Quality trimmed reads generated from subgingival_plaque samples from HHS_763496533 host across multi...

Synthetic gene clusters md.txt.bz2

File (Entity type)

A 367 MB file from HMP produced from OBI:0002623 as part of the HHS project

hmasm2 SRS013950

Collection (Entity type)

Contigs assembled from sequence reads of SRS013950 sample using IDBA-UD

hmgi1

Collection (Entity type)

Gene Index: The collection contains gene index files generated by running gene predictions and annot...

hmgc1 subgingival plaque

Collection (Entity type)

This collection contains a non-redundant catalog of bacterial genes from subgingival_plaque samples....

hmgoi1 carbohydrate active enzymes

Collection (Entity type)

Concatenated gene abundance summary file containing all sample output for carbohydrate_active_enzyme...

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CFDE Workbench

Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.