DataKnowledgeCloudtrainingcoordination

BS GH6PH611 (Biosample)

Subject:

PT 19GCSK2S

Subject (Entity type)

Project:

SD BHJXBDQK

Project (Entity type)

Disease:

cancer

Disease (Entity type)

Dcc Asset:

2026Q3 C2M2 datapackage.zip

Processed File (Entity type)

Dcc:

Kids First

DCC (Entity type)

Collection:

BS GH6PH611

Collection (Entity type)

Anatomy:

organ system subdivision

Anatomy (Entity type)

Creation Time:2022-04-04 18:05:52.918189

Results found

Linked to

	Label	Description
	PT 19GCSK2S Subject (Entity type)	A subject produced as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.controlfreec.ratio.log2.png File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4 cnvkit reference.cnn File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.controlfreec.info.txt File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.strelka2 somatic.norm.annot.protected.vcf.gz File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.vardict somatic.merged.reheadered.vcf.gz File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.tumor.gatk cnv.denoised.png File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.mutect2 filtered.reheadered.vcf.gz File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.manta.somaticSV.reheadered.vcf.gz File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project
	4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.gatk cnv.funcotated.tsv.gene list.txt File (Entity type)	A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

Subject

PT 19GCSK2S

Subject (Entity type)

A subject produced as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.controlfreec.ratio.log2.png

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4 cnvkit reference.cnn

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.controlfreec.info.txt

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.strelka2 somatic.norm.annot.protected.vcf.gz

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.vardict somatic.merged.reheadered.vcf.gz

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.tumor.gatk cnv.denoised.png

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.mutect2 filtered.reheadered.vcf.gz

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.manta.somaticSV.reheadered.vcf.gz

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

File

4b88cfd0-d234-4bfc-9934-7e7e7883e4b4.gatk cnv.funcotated.tsv.gene list.txt

File (Entity type)

A file from Kids First produced from OBI:0002117 as part of the SD BHJXBDQK project

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.