DataCloudKnowledgetrainingcoordination

EXR-LLAUR1LLAUR01RNAISO055-BS (Biosample)

Subject:

EXR-LLAUR1LLAUR01RNAISO03-DO

Subject (Entity type)

Sample Prep Method:

sample preparation for sequencing assay

Sample Prep Method (Entity type)

Project:

EXR-LLAUR1LLAUR01RNAISO001-ST

Project (Entity type)

Disease:

cholangiocarcinoma

Disease (Entity type)

Dcc Asset:

exRNA CFDE 102025.zip

Processed File (Entity type)

Dcc:

ExRNA

DCC (Entity type)

Collection:

EXR-LLAUR1IeCUEp-AN

Collection (Entity type)

Biofluid:

Culture Media, Conditioned

Biofluid (Entity type)

Anatomy:

bile duct

Anatomy (Entity type)

Creation Time:2023-11-13T00:00:00

Results found

Linked to

	Label	Description
	readCounts gencode antisense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	endogenousAlignments genomeMapped transcriptome Aligned.out.sorted.bam.coverage.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	cholangiocarcinoma Disease (Entity type)	A bile duct adenocarcinoma that has_material_basis_in bile duct epithelial cells.
	readCounts tRNA sense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	sample PKSupUltra1 204 S12 L001 R1 001 115 150 fastq.adapterSeq File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	readCounts gencode sense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	readCounts gencode antisense geneLevel.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	EXR-LLAUR1IeCUEp-AN Collection (Entity type)	Analysis Entry
	ExogenousGenomicAlignments.result.taxaAnnotated.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project
	EXR-LLAUR1LLAUR01RNAISO03-DO Subject (Entity type)	A subject from ExRNA produced as part of the exRNA Atlas project

File

readCounts gencode antisense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

File

endogenousAlignments genomeMapped transcriptome Aligned.out.sorted.bam.coverage.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

Disease

cholangiocarcinoma

Disease (Entity type)

A bile duct adenocarcinoma that has_material_basis_in bile duct epithelial cells.

File

readCounts tRNA sense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

File

sample PKSupUltra1 204 S12 L001 R1 001 115 150 fastq.adapterSeq

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

File

readCounts gencode sense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

File

readCounts gencode antisense geneLevel.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

Collection

EXR-LLAUR1IeCUEp-AN

Collection (Entity type)

Analysis Entry

File

ExogenousGenomicAlignments.result.taxaAnnotated.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR LLAUR1LLAUR01RNAISO001 ST project

Subject

EXR-LLAUR1LLAUR01RNAISO03-DO

Subject (Entity type)

A subject from ExRNA produced as part of the exRNA Atlas project

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Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

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