DataKnowledgeCloudtrainingcoordination

EXR-JFRAN1DKS8CE2-BS (Biosample)

Subject:

EXR-JFRAN1CRCKRAS-DO

Subject (Entity type)

Sample Prep Method:

sample preparation for sequencing assay

Sample Prep Method (Entity type)

Project:

EXR-JFRAN1CRCKRAS-ST

Project (Entity type)

Disease:

colorectal cancer

Disease (Entity type)

Dcc Asset:

exRNA CFDE 102025.zip

Processed File (Entity type)

Dcc:

ExRNA

DCC (Entity type)

Collection:

EXR-JFRAN16VDql8-AN

Collection (Entity type)

Biofluid:

Culture Media, Conditioned

Biofluid (Entity type)

Anatomy:

colon

Anatomy (Entity type)

Results found

Linked to

	Label	Description
	EXR-JFRAN1CRCKRAS-DO Subject (Entity type)	A subject produced as part of the exRNA Atlas project
	EXR-JFRAN16VDql8-AN Collection (Entity type)	Analysis Entry
	endogenousAlignments genomeMapped transcriptome Aligned.bedgraph.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	endogenousAlignments genome Aligned.bedgraph.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	endogenousAlignments genome Aligned.bedgraph.intersect RBP all combined.bed.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	endogenousAlignments genomeUnmapped transcriptome Aligned.bedgraph.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	filteringAlignments rRNA Aligned.bedgraph.xz File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	endogenousAlignments genomeMapped transcriptome Aligned.out.sorted.bam.coverage.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	endogenousAlignments genome Aligned.out.bam.CIGARstats.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project
	readCounts gencode sense.txt File (Entity type)	A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

Subject

EXR-JFRAN1CRCKRAS-DO

Subject (Entity type)

A subject produced as part of the exRNA Atlas project

Collection

EXR-JFRAN16VDql8-AN

Collection (Entity type)

Analysis Entry

File

endogenousAlignments genomeMapped transcriptome Aligned.bedgraph.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

endogenousAlignments genome Aligned.bedgraph.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

endogenousAlignments genome Aligned.bedgraph.intersect RBP all combined.bed.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

endogenousAlignments genomeUnmapped transcriptome Aligned.bedgraph.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

filteringAlignments rRNA Aligned.bedgraph.xz

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

endogenousAlignments genomeMapped transcriptome Aligned.out.sorted.bam.coverage.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

endogenousAlignments genome Aligned.out.bam.CIGARstats.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

File

readCounts gencode sense.txt

File (Entity type)

A file from ExRNA produced from OBI:0002112 as part of the EXR JFRAN1CRCKRAS ST project

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Consortium

Community

Resources

@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.