bulk assay for transposase-accessible chromatin using sequencing (Assay Type)

Synonyms:bulk ATAC-seq

Description:An assay for transposase-accessible chromatin using sequencing in which the sample that is sequenced is derived from a collection of cells, such as a tissue sample or entire cell culture, and therefore provides results representative of the aggregate of sample cells.

Results found

Linked to

	Label	Description
	LAPMAP 20191217B.Ad1 N505 S6 R3.fastq.gz File (Entity type)	A 4.04 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project
	Bei CO2-26 B008-A-001-ACCAGTCC-CTTTCCTT-GGACAGGG-TAGGTAAA S33 L001 R2 001.fastq.gz File (Entity type)	A 1.14 GB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project
	Bei CO2-21 B008-A-402-AGACGGAT-CCTTTAGA-GTCGACTC-TAGACTCG S29 L003 I1 001.fastq.gz File (Entity type)	A 335 MB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project
	LAPMAP 20210514L N528 R1.fastq.gz File (Entity type)	A 1.40 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project
	Bei CO2-11 B012-A-301-ACGTTACA-CGTAGGTT-GACGACGG-TTACCTAC S19 L001 I1 001.fastq.gz File (Entity type)	A 1.08 GB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project
	LAPMAP 20210514L N524 R2.fastq.gz File (Entity type)	A 1.11 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project
	LAPMAP 20210514K N528 R3.fastq.gz File (Entity type)	A 1.50 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project
	BUKMAP 20190822B.Ad1 N530 S27 R1.fastq.gz File (Entity type)	A 1.56 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project
	B006-A-101 S4 L001 R1 001.fastq.gz File (Entity type)	A 2.05 GB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project
	LAPMAP 20200317E.Ad1 N532 S29 R2.fastq.gz File (Entity type)	A 6.27 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

LAPMAP 20191217B.Ad1 N505 S6 R3.fastq.gz

File (Entity type)

A 4.04 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

Bei CO2-26 B008-A-001-ACCAGTCC-CTTTCCTT-GGACAGGG-TAGGTAAA S33 L001 R2 001.fastq.gz

File (Entity type)

A 1.14 GB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project

Bei CO2-21 B008-A-402-AGACGGAT-CCTTTAGA-GTCGACTC-TAGACTCG S29 L003 I1 001.fastq.gz

File (Entity type)

A 335 MB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project

LAPMAP 20210514L N528 R1.fastq.gz

File (Entity type)

A 1.40 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

Bei CO2-11 B012-A-301-ACGTTACA-CGTAGGTT-GACGACGG-TTACCTAC S19 L001 I1 001.fastq.gz

File (Entity type)

A 1.08 GB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project

LAPMAP 20210514L N524 R2.fastq.gz

File (Entity type)

A 1.11 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

LAPMAP 20210514K N528 R3.fastq.gz

File (Entity type)

A 1.50 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

BUKMAP 20190822B.Ad1 N530 S27 R1.fastq.gz

File (Entity type)

A 1.56 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

B006-A-101 S4 L001 R1 001.fastq.gz

File (Entity type)

A 2.05 GB file from HuBMAP produced from OBI:0003089 as part of the Stanford TMC project

LAPMAP 20200317E.Ad1 N532 S29 R2.fastq.gz

File (Entity type)

A 6.27 GB file from HuBMAP produced from OBI:0003089 as part of the University of California San Diego TMC project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.