slide-seq assay (Assay Type)

Id:OBI:0003107

Description:An RNA-seq assay that involves transfer of RNA from tissue sections onto a surface covered in DNA-barcoded beads with known positions, allowing the locations of the RNA to be inferred by sequencing.

Results found

Linked to

	Label	Description
	Puck 210113 25.read1.fastq.gz File (Entity type)	A 4.56 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 200903 25.read2.fastq.gz File (Entity type)	A 6.04 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 210113 40.read1.fastq.gz File (Entity type)	A 4.53 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 210113 35.read1.fastq.gz File (Entity type)	A 3.79 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 200501 26.read2.fastq.gz File (Entity type)	A 5.14 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 210113 34.digital expression.txt.gz File (Entity type)	A 32.2 MB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 210113 32.read1.fastq.gz File (Entity type)	A 3.57 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 200506 03.read1.fastq.gz File (Entity type)	A 3.69 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 210113 22.digital expression.txt.gz File (Entity type)	A 24.9 MB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project
	Puck 200501 25.read2.fastq.gz File (Entity type)	A 5.40 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 210113 25.read1.fastq.gz

File (Entity type)

A 4.56 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 200903 25.read2.fastq.gz

File (Entity type)

A 6.04 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 210113 40.read1.fastq.gz

File (Entity type)

A 4.53 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 210113 35.read1.fastq.gz

File (Entity type)

A 3.79 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 200501 26.read2.fastq.gz

File (Entity type)

A 5.14 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 210113 34.digital expression.txt.gz

File (Entity type)

A 32.2 MB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 210113 32.read1.fastq.gz

File (Entity type)

A 3.57 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 200506 03.read1.fastq.gz

File (Entity type)

A 3.69 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 210113 22.digital expression.txt.gz

File (Entity type)

A 24.9 MB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

Puck 200501 25.read2.fastq.gz

File (Entity type)

A 5.40 GB file from HuBMAP produced from OBI:0003107 as part of the Broad Institute RTI project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.