mapping RNA-genome interactions assay (Assay Type)

Synonyms:MARGI

Description:A nuclear ligation assay for probing RNA-DNA interactions in the nucleus. Nuclei are crosslinked, and RNA fragments are ligated to proximal DNA fragments via a special linker molecule. After reverse transcription, high-throughput sequencing is performed.

Results found

Linked to

	Label	Description
	4DNFI53KKGGO.bam File (Entity type)	A 64.9 GB file from 4DN produced from OBI:0003314 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project
	4DNFIXUWU6G2.bw File (Entity type)	A 303 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project
	4DNFIDEZI7W6.bw File (Entity type)	A 226 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project
	4DNFIICMBLZH.bam File (Entity type)	A 69.5 GB file from 4DN produced from OBI:0003314 as part of the 71171a4e dca1 44cb 8375 fafd896c6923 project
	4DNFI8F49MVO.bw File (Entity type)	A 186 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project
	4DNFIBJHSQ2O.pairs.gz File (Entity type)	A 1.57 GB file from 4DN produced from OBI:0003314 as part of the 71171a4e dca1 44cb 8375 fafd896c6923 project
	4DNFISL8NBG4.bw File (Entity type)	A 243 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project
	4DNFIKTRLKYW.pairs.gz File (Entity type)	A 2.01 GB file from 4DN produced from OBI:0003314 as part of the 71171a4e dca1 44cb 8375 fafd896c6923 project
	4DNFIYQCIO2P.fastq.gz File (Entity type)	A 20.7 GB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project
	4DNFIM6SYZMF.fastq.gz File (Entity type)	A 18.5 GB file from 4DN produced from OBI:0003314 as part of the c55dd1f0 433b 4714 bfce 8b3ae09f071c project

4DNFI53KKGGO.bam

File (Entity type)

A 64.9 GB file from 4DN produced from OBI:0003314 as part of the b0b9c607 f8b4 4f02 93f4 9895b461334b project

4DNFIXUWU6G2.bw

File (Entity type)

A 303 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project

4DNFIDEZI7W6.bw

File (Entity type)

A 226 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project

4DNFIICMBLZH.bam

File (Entity type)

A 69.5 GB file from 4DN produced from OBI:0003314 as part of the 71171a4e dca1 44cb 8375 fafd896c6923 project

4DNFI8F49MVO.bw

File (Entity type)

A 186 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project

4DNFIBJHSQ2O.pairs.gz

File (Entity type)

A 1.57 GB file from 4DN produced from OBI:0003314 as part of the 71171a4e dca1 44cb 8375 fafd896c6923 project

4DNFISL8NBG4.bw

File (Entity type)

A 243 MB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project

4DNFIKTRLKYW.pairs.gz

File (Entity type)

A 2.01 GB file from 4DN produced from OBI:0003314 as part of the 71171a4e dca1 44cb 8375 fafd896c6923 project

4DNFIYQCIO2P.fastq.gz

File (Entity type)

A 20.7 GB file from 4DN produced from OBI:0003314 as part of the 1a4da807 8221 47d2 96ab 7a31485974c3 project

4DNFIM6SYZMF.fastq.gz

File (Entity type)

A 18.5 GB file from 4DN produced from OBI:0003314 as part of the c55dd1f0 433b 4714 bfce 8b3ae09f071c project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.