single-cell RNA sequencing assay (Assay Type)

Synonyms:scRNA-seq

Description:An RNA sequencing assay that uses RNA extracts as input that can be traced to a single cell of origin.

Results found

Linked to

	Label	Description
	4DNFILRVGI8M.hdf5 File (Entity type)	A 561 MB file from 4DN produced from OBI:0002631 as part of the 4871e338 b07d 4665 a00a 357648e5bad6 project
	CU003-U54-HRA-009-A GTGGATCAAA-CAGGGTTGGC HFKVJDSX3 L004 001 R2.fastq.gz File (Entity type)	A 1.44 GB file from SenNet produced from OBI:0002631 as part of the TMC Columbia University project
	CU056-U54-HRA-037-A-CGGCTGGATG-GTGCTTATCA-HV2JTDSX3 S1 L001 R1 001.fastq.gz File (Entity type)	A 4.19 GB file from SenNet produced from OBI:0002631 as part of the TMC Columbia University project
	DSP-1001660015072-G-F03 S111 L002 R2 001.fastq.gz File (Entity type)	A 24.6 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660015089-B-B12 S492 L004 R2 001.fastq.gz File (Entity type)	A 120 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	DSP-1001660006332-A-E07 S54 L001 R1 001.fastq.gz File (Entity type)	A 818 MB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project
	bamtofastq S1 L006 R2 002.fastq.gz File (Entity type)	A 1.40 GB file from SenNet produced from OBI:0002631 as part of the TMC UConn Health project
	DSP-1001660009182-C-F01 S83 L002 R1 001.fastq.gz File (Entity type)	A 192 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project
	bamtofastq S1 L006 R1 001.fastq.gz File (Entity type)	A 348 MB file from SenNet produced from OBI:0002631 as part of the TMC UConn Health project
	DSP-1001660014604-A-A01 S1 L004 R2 001.fastq.gz File (Entity type)	A 25.2 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

4DNFILRVGI8M.hdf5

File (Entity type)

A 561 MB file from 4DN produced from OBI:0002631 as part of the 4871e338 b07d 4665 a00a 357648e5bad6 project

CU003-U54-HRA-009-A GTGGATCAAA-CAGGGTTGGC HFKVJDSX3 L004 001 R2.fastq.gz

File (Entity type)

A 1.44 GB file from SenNet produced from OBI:0002631 as part of the TMC Columbia University project

CU056-U54-HRA-037-A-CGGCTGGATG-GTGCTTATCA-HV2JTDSX3 S1 L001 R1 001.fastq.gz

File (Entity type)

A 4.19 GB file from SenNet produced from OBI:0002631 as part of the TMC Columbia University project

DSP-1001660015072-G-F03 S111 L002 R2 001.fastq.gz

File (Entity type)

A 24.6 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660015089-B-B12 S492 L004 R2 001.fastq.gz

File (Entity type)

A 120 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

DSP-1001660006332-A-E07 S54 L001 R1 001.fastq.gz

File (Entity type)

A 818 MB file from SenNet produced from OBI:0002631 as part of the TDA Mayo Clinic Schafer project

bamtofastq S1 L006 R2 002.fastq.gz

File (Entity type)

A 1.40 GB file from SenNet produced from OBI:0002631 as part of the TMC UConn Health project

DSP-1001660009182-C-F01 S83 L002 R1 001.fastq.gz

File (Entity type)

A 192 KB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

bamtofastq S1 L006 R1 001.fastq.gz

File (Entity type)

A 348 MB file from SenNet produced from OBI:0002631 as part of the TMC UConn Health project

DSP-1001660014604-A-A01 S1 L004 R2 001.fastq.gz

File (Entity type)

A 25.2 MB file from HuBMAP produced from OBI:0002631 as part of the TMC University of California San Diego focusing on female reproduction project

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@CFDE Workbench 2026

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

Consortium

Community

Resources

CFDE Workbench

The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.

@CFDE Workbench 2026

This repository is under review for potential modification in compliance with Administration directives.