anatomy.tsv
Sourced from the CFDE-CC Documentation Wiki
This table must not be manually created. Users should skip this, and all other tables marked "Built by script" in this summary, preparing only the rest of their datapackage's TSV files (those marked "Prepared by submitter") for submission. Once the "Prepared by submitter" tables are ready, users should then use the CFDE C2M2 utilities to build their C2M2 package.
The anatomy.tsv table will have as many rows as the number of unique UBERON terms appearing in the anatomy column of biosample.tsv or collection_anatomy.tsv.
| Field | Field Description | Required? | Field Value Type | Extra Info |
|---|
| id | A valid UBERON, CL or CLO term | Required | string | UBERON lookup service Example: UBERON:0006956; CL lookup service Example: CL:2000055; CLO lookup service Example: CLO:0008172 |
| name | A short, human-readable, machine-read-friendly label for this UBERON, CL or CLO term | Required | string | |
| description | A human-readable description of this UBERON, CL or CLO term | Optional | string | |
| synonyms | A list of synonyms for this term as identified by the UBERON, CL or CLO metadata | Optional | JSON array of strings | provide empty JSON array [] if value is null |