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Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
FEATURED

Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets

Given RNA-seq samples from a patient tumor, we screen for targets which are highly expressed in the tumor but lowly expressed across all healthy human tissues in GTEx. Detailed information about the selected target are queried from several DCCs.
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
Mild Cognitive Impairment Use Case
FEATURED

Mild Cognitive Impairment Use Case

Find all IDG and GTEx assertions that may be related to mild cognitive impairment and any tissue type.
Mild Cognitive Impairment Use Case
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
FEATURED

Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets

Given RNA-seq samples from a patient tumor, we screen for targets which are highly expressed in the tumor but lowly expressed across all healthy human tissues in GTEx. Detailed information about the selected target are queried from several DCCs.
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
Mild Cognitive Impairment Use Case
FEATURED

Mild Cognitive Impairment Use Case

Find all IDG and GTEx assertions that may be related to mild cognitive impairment and any tissue type.
Mild Cognitive Impairment Use Case
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
FEATURED

Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets

Given RNA-seq samples from a patient tumor, we screen for targets which are highly expressed in the tumor but lowly expressed across all healthy human tissues in GTEx. Detailed information about the selected target are queried from several DCCs.
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
Mild Cognitive Impairment Use Case
FEATURED

Mild Cognitive Impairment Use Case

Find all IDG and GTEx assertions that may be related to mild cognitive impairment and any tissue type.
Mild Cognitive Impairment Use Case

All Use Cases

Explore different use cases that utilizes data from different CFDE participating programs
cancer (5)
variant (2)
gene (2)
tissue (1)
small molecule (1)
pathway (1)
differential gene expression (1)
Associations between Two Variants
Playbook Workflow Builder

Associations between Two Variants

Given two variants, we find their closest genes and present combined knowledge about them including their expression in tumors & healthy tissue, interactions between the two proteins, and gene sets containing the two genes.
Associations between Two Variants
variant
gene
cancer
Variant Expression in Tumor/Healthy
Playbook Workflow Builder

Variant Expression in Tumor/Healthy

We construct a joint plot showing how the variant's closest gene is expressed in tumors from KidsFirst and healthy human tissue from GTEx.
Variant Expression in Tumor/Healthy
variant
tissue
cancer
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
Playbook Workflow Builder

Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets

Given RNA-seq samples from a patient tumor, we screen for targets which are highly expressed in the tumor but lowly expressed across all healthy human tissues in GTEx. Detailed information about the the selected target are queried from several DCCs.
Cell Surface Targets for Individual Cancer Patients Analyzed with Common Fund Datasets
gene
cancer
Therapeutic pathways in breast cancer
ProKN

Therapeutic pathways in breast cancer

Explore kinase inhibitor drugs and relevant biological pathways that could be targeted in breast cancer patients who didn't respond to the selected treatment therapy.
Therapeutic pathways in breast cancer
small molecule
pathway
cancer
Re-Analysis of GSE301503
Playbook Workflow Builder

Re-Analysis of GSE301503

Reanalysis workflow on H727 lung carcinoid cells with active YAP overexpression
Re-Analysis of GSE301503
cancer
differential gene expression
CFDE Workbench
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@CFDE Workbench 2026
The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.
Consortium
About the CFDECF ProgramsCFDE CentersPartnershipsPilot Projects
Community
Workbench TutorialTraining & OutreachDocumentationGet QR CodesFunding Opportunities
Resources
Data & MetadataToolsChatbotUse CasesPublications
CFDE Workbench
Report a bug
The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.
@CFDE Workbench 2026
This repository is under review for potential modification in compliance with Administration directives.